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Architecting the spatial enablement of a film location database for enhanced geographic analysis and query
(University of Missouri--Columbia, 2009)
to process data from different sources. The system must allow the inclusion of data as it is added to the database by end-users and maintain a structure that is still optimized for querying yet not limiting the availability of the data....
Bioinformatics methods for protein identification using peptide mass fingerprinting data
(University of Missouri--Columbia, 2009)
development: we implemented our computational methods in an open source package "ProteinDecision" which is freely available upon request. ....
PRIMEGENSv2 : a service based platform using object oriented model view controller design pattern
(University of Missouri--Columbia, 2009)
There are a number of tools and software packages dealing with the problem of efficient primer and probe design. In an era of fast paced research it is rather difficult for any researcher to change their favorite tool. So ...
MUPrimer : a tool for finding allele specific PCR-primers for homologous gene sequences
(University of Missouri--Columbia, 2009)
[ACCESS RESTRICTED TO THE UNIVERSITY OF MISSOURI AT REQUEST OF AUTHOR.] Polymerase chain reaction (PCR) amplification of specific regions of DNA has proven to be a powerful tool in molecular biology research. Synthetic ...
A compact representation for 3D animation using octrees and affine transformation
(University of Missouri--Columbia, 2009)
[ACCESS RESTRICTED TO THE UNIVERSITY OF MISSOURI AT REQUEST OF AUTHOR.] We present a new and compact 3D representation for non-rigid objects using motion vectors between two consecutive frames. Our method relies on an ...
Genome scale meta analysis of microarrays for biological inferences
(University of Missouri--Columbia, 2009)
In this present era of high-throughput technologies, meta-analysis is being widely used to integrate multiple similar high throughput studies. Here we propose a novel framework for applying meta-analysis techniques on ...
Applications of deep neural networks to protein structure prediction
(University of Missouri--Columbia, 2018)
was then implemented as a standalone tool integrated into MUFold package and freely available to research community. A webserver called MUFold-SS-Angle is also developed for protein property prediction. The input feature to those deep neural networks is a carefully...
Improving protein structure prediction by deep learning and computational optimization
(University of Missouri--Columbia, 2019)
or web servers which are freely available to the scientific community....
Heuristics for searching chemical structures
(University of Missouri--Columbia, 2007)
Chemical and biochemical structure databases are useful for retrieving information to a wide range of users, ranging from a high school student to a medical research scientist. These databases provide the user with various ...
Protein contact distance and structure prediction driven by deep learning
(University of Missouri--Columbia, 2023)
-based protein distance prediction tool. Finally, CDPred, a 2D attention-based deep neural network is developed to predict inter-chain distances in protein complexes. All the methods are available as software tools or web servers which are freely available...
Design and implementation of a portable prTorrent simulator system
(University of Missouri--Columbia, 2010)
[ACCESS RESTRICTED TO THE UNIVERSITY OF MISSOURI AT REQUEST OF AUTHOR.] The absence of a system that could perform as both a P2P simulator and a P2P emulator poses a barrier to researchers and developers. The objective of ...
Data mining and machine learning methods for chromosome conformation data analysis
(University of Missouri--Columbia, 2019)
are the first of their kind in the 3D chromosome and genome research field. All the methods are available as software tools that are freely available to the scientific community....
Building hybrid multicast by combining IP and application layers
(University of Missouri--Columbia, 2007)
This work presents new multicasting algorithm called Hybrid Multicast (HM). HM is a software solution that implements the integration between ALM and IP Multicast. The proposed solution always tries to use IP Multicast capability wherever available...
Protein tertiary structure prediction and refinement using deep learning
(University of Missouri--Columbia, 2022)
with the deep residual convolutional network- DeepDist was developed. (d) A novel end-to-end protein structure refinement tool called ATOMRefine was proposed. All the methods above have stand-alone software tools that are freely released to the public....
The study of privacy issues in the use of cloud storage
(University of Missouri--Columbia, 2019)
publicly available storage providers....
Feasibility of the nintendo Ds for teaching problem-based learning in kindergarten through twelfth grade students
(University of Missouri--Columbia, 2008)
Problem-based learning (PBL) is an instructional approach that has been employed successfully since the 1960s and continues to gain mainstream acceptance in many areas of study. PBL is an instructional, and curricular, ...
Dynamic agent safety logic : theory and applications
(University of Missouri--Columbia, 2019)
Modal logic is a family of logics for reasoning about relational structures, broadly construed. It sits at the nexus of philosophy, mathematics, software engineering, and economics. By modeling a target domain as a relational ...
Computational protein structure prediction using deep learning
(University of Missouri--Columbia, 2020)
structures. In this dissertation, new deep learning methods and deep learning networks have been proposed for three problems in protein structure prediction: loop modeling, contact map prediction, and contact map refinement. They have been implemented...
Building environmentally-aware classifiers on streaming data
(University of Missouri--Columbia, 2022)
The three biggest challenges currently faced in machine learning, in our estimation, are the staggering quantity of data we wish to analyze, the incredibly small proportion of these data that are labeled, and the apparent ...
Revealing the conformation and properties of human genome, protein molecules and protein domain co-occurrence network
(University of Missouri--Columbia, 2012)
Deoxyribonucleic acid, or DNA, encodes genetic instructions for the functionalities of organisms. For human beings, 23 pairs of chromosomes, containing DNA strands, form a globule structure in the nucleus. This chromosomal ...