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ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval
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ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval
Please use this identifier to cite or link to this item: http://hdl.handle.net/10355/2354
| Title: | ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval |
| Author: | Reneker, Jeff; Shyu, Chi-Ren; Zeng, Peiyu; Polacco, Joseph C., 1944-; Gassmann, Walter, 1964- |
| Keywords: |
cross-species
Advanced Content Matching Engine for Sequences (ACMES) |
| Date: | 2004 |
| Publisher: | Nucleic Acids Research |
| Citation: | Nucleic Acids Research, 32 (2004) |
| Abstract: | We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10 000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search. |
| URI: | http://hdl.handle.net/10355/2354 |
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