ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval

MOspace/Manakin Repository

Breadcrumbs Navigation

ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval

Please use this identifier to cite or link to this item: http://hdl.handle.net/10355/2354

[+] show full item record


Title: ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval
Author: Reneker, Jeff; Shyu, Chi-Ren; Zeng, Peiyu; Polacco, Joseph C., 1944-; Gassmann, Walter, 1964-
Keywords: cross-species
Advanced Content Matching Engine for Sequences (ACMES)
Date: 2004
Publisher: Nucleic Acids Research
Citation: Nucleic Acids Research, 32 (2004)
Abstract: We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10 000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search.
URI: http://hdl.handle.net/10355/2354

This item appears in the following Collection(s)

[+] show full item record