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    ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval

    Reneker, Jeff
    Shyu, Chi-Ren
    Zeng, Peiyu
    Polacco, Joseph C., 1944-
    Gassmann, Walter, 1964-
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    [PDF] ACMESFastMultiple-genomeSearches.pdf (799.2Kb)
    Date
    2004
    Format
    Article
    Metadata
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    Abstract
    We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10 000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search.
    URI
    http://hdl.handle.net/10355/2354
    Part of
    Center for Geospatial Intelligence publications (MU)
    Citation
    Nucleic Acids Research, 32 (2004)
    Rights
    OpenAccess.
    This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 License.
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    • Center for Geospatial Intelligence publications (MU)

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