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dc.contributor.advisorXu, Dong, 1965-eng
dc.contributor.authorZhang, Hongxineng
dc.date.issued2014eng
dc.date.submitted2014 Springeng
dc.description.abstractSoybean Knowledge Base (SoyKB) is a comprehensive website, which contains lots of web sources for soybean. By integrating multi omics data and solving data storage problem, SoyKB is able to build connection between multiple datasets. Lots of hands--on tools has been designed and developed into SoyKB. And three of them, SNPViz, Differential Expression and Protein BioViewer, will be introduced in detailed methodology and function demonstration. SNPViz is a simple--to--use SNP haplotype viewer. Its variety of options to view haplotypes from designated gene areas to larger chromosomal areas makes users able to scrutinize on different levels with ease. Its dataset selection function increases its convenience to use as it allows users to put in SNP--array files along with annotation files. SNPViz collects all the samples and composes a phylogeny tree according to the identity of haplotypes. Differential Expression is for visualizing all kinds of data including Transcriptomics RNA--Seq, Microarray, Metabolites and Proteomics data, which all come from public sources and collaborators. It features six functions: Gene Lists, Venn Diagram, Volcano Plot, Function Information, Path Information and Enrichment Analysis. They will be used based on thresholds settings (p--value/q--value, fold change) by users' input. Protein BioViewer is designed to show the primary protein sequence, predicted secondary structures, phosphorylation positions, amino acid characteristics, functional domain positions and transmembrane helix positions.eng
dc.format.extent1 online resource (ix, 63 pages) : illustrations (chiefly color) + 2 supplementary files.eng
dc.identifier.merlinb109695628eng
dc.identifier.oclc917722911eng
dc.identifier.urihttps://hdl.handle.net/10355/44438
dc.identifier.urihttps://doi.org/10.32469/10355/44438eng
dc.languageEnglisheng
dc.publisherUniversity of Missouri--Columbiaeng
dc.relation.ispartofcommunityUniversity of Missouri-Columbia. Graduate School. Theses and Dissertations. These. 2014 Theses. 2014 Freely available theseseng
dc.subjectAuthor supplied: SoyKB, SNPViz, soybean, computer science, bioinformaticseng
dc.subject.lcshSoybeaneng
dc.subject.lcshBig dataeng
dc.titleDevelopment of tools for SoyKB: SNPViz, differential expression and protein bioviewereng
dc.title.alternativeDevelopment of tools for Soybean Knowledge Base.eng
dc.typeThesiseng
thesis.degree.disciplineComputer science (MU)eng
thesis.degree.grantorUniversity of Missouri--Columbiaeng
thesis.degree.levelMasterseng
thesis.degree.nameM.S.eng


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