Hypogalactia in mammary quarters adjacent to LPS-infused quarters is associated with transcriptional changes in immune genes : supplemental tables 1-4

Abstract

Supplemental files for: Hypogalactia in mammary quarters adjacent to LPS-infused quarters is associated with transcriptional changes in immune genes. Supplemental File S1: Gene expression comparisons. DEG sorted by gene set at 3 and 12 h post-infusion (Table 1); DESeq2 results for all treatment or time comparisons of genes expressed in mammary tissue at 3 h, 12 h, or across time. Supplemental File S2: Pathway analysis results for 3 h comparisons. Lists the KEGG term; count (no. genes enriching term); % (percent of total genes belonging to term enriched by gene set); P-value (EASE score); genes; Benjamini-corrected FDR; and direction of regulation in A) local response (T-L vs T-S or C-S), or B) adjacent response (T-S vs C-S). Supplemental File S3: Pathway analysis results for 12 h comparisons. Lists the KEGG term; count (no. genes enriching term); % (percent of total genes belonging to term enriched by gene set); P-value (EASE score); genes; Benjamini-corrected FDR; and direction of regulation in A) local response (T-L vs T-S or C-S), B) common and unique local response (T-L vs T-S and T-L vs C-S), or C) adjacent response (T-S vs C-S). Supplemental File S4: Pathway analysis results for treatment comparisons over time. Lists the KEGG term; count (no. genes enriching term); % (percent of total genes belonging to term enriched by gene set); P-value (EASE score); genes; Benjamini-corrected FDR; and direction of regulation at 12 h compared to 3 h in A) T-L, B) T-S, or C) C-S.